semi automated eeg preprocessing pipeline Search Results


99
Oxford Instruments semi automated imaris pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Imaris Pipeline, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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semi automated imaris pipeline - by Bioz Stars, 2026-04
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90
MathWorks Inc semi-automated analysis pipeline particle analysis assistant
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Analysis Pipeline Particle Analysis Assistant, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
semi-automated analysis pipeline particle analysis assistant - by Bioz Stars, 2026-04
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99
Illumina Inc semi automated pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Pipeline, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 99 stars, based on 1 article reviews
semi automated pipeline - by Bioz Stars, 2026-04
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90
MathWorks Inc semi-automated pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Pipeline, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
semi-automated pipeline - by Bioz Stars, 2026-04
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90
MathWorks Inc standard harvard automated processing pipeline for electroencephalography
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Standard Harvard Automated Processing Pipeline For Electroencephalography, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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standard harvard automated processing pipeline for electroencephalography - by Bioz Stars, 2026-04
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90
KNIME GmbH semi-automated pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Pipeline, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
semi-automated pipeline - by Bioz Stars, 2026-04
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90
MathWorks Inc matlab r2019a
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Matlab R2019a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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90
MathWorks Inc semi-automated image analysis pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Image Analysis Pipeline, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/semi-automated image analysis pipeline/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
semi-automated image analysis pipeline - by Bioz Stars, 2026-04
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90
Thermo Fisher ro3 1000 fragment library
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Ro3 1000 Fragment Library, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ro3 1000 fragment library - by Bioz Stars, 2026-04
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90
MathWorks Inc semi-automated segmentation pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Semi Automated Segmentation Pipeline, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
semi-automated segmentation pipeline - by Bioz Stars, 2026-04
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90
RStudio customized semi-automated pipeline
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Customized Semi Automated Pipeline, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/customized semi-automated pipeline/product/RStudio
Average 90 stars, based on 1 article reviews
customized semi-automated pipeline - by Bioz Stars, 2026-04
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90
MathWorks Inc harvard automated processing pipeline for eeg
(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) <t>Imaris-assisted,</t> <t>automated</t> cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the <t>pipeline</t> for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.
Harvard Automated Processing Pipeline For Eeg, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
harvard automated processing pipeline for eeg - by Bioz Stars, 2026-04
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Image Search Results


(A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) Imaris-assisted, automated cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the pipeline for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.

Journal: bioRxiv

Article Title: Analysis of the hypothalamic oxytocin system and oxytocin receptor-expressing astrocytes in a mouse model of Prader-Willi syndrome

doi: 10.1101/2022.08.15.503958

Figure Lengend Snippet: (A) Schematic depiction of the transgenic modification in Magel2 tm1 . Stw mice; insertion of the LacZ B-Gal gene results in expression of a fused Magel2 protein (B) Images show presence of LacZ reporter (X-gal staining) in Magel2 tm1 . Stw mice. (C) Schematic depiction of coronal sectioning and anatomical location of the PVN. (D) Side-to-side comparison of OT neurons in the PVN of WT and Magel2 tm1 . Stw mice at various Bregma levels. Scale bar=100µm. (E) No difference in OT signal intensity between WT and Magel2 tm1 . Stw mice (n=5 per group). (F) Imaris-assisted, automated cell counting of PVN OT neurons via the spot function. raw image of PVN OT neurons, each spot represents one OT neuron, co-localization of OT neurons and spots, high magnification image showing placement of spots in the OTergic soma. (G) Quantification of OT cell numbers within the PVN in male and female mice. Significant differences were observed in the total number of OT cells and the caudal PVN (parvocellular subdivision, n=5 per group). (H) Depiction of the pipeline for three-dimensional reconstruction of OT neurons based on fluorescent immunolabeling. High magnification insets highlight the detailed reconstruction of OTergic somata. (I) No difference in OTergic morphology between WT and Magel2 tm1 . Stw mice (n=5 per group). *p<0.05, **p<0.01, one-way ANOVA.

Article Snippet: Stw mice using our previously established, semi-automated Imaris pipeline ( , ).

Techniques: Transgenic Assay, Modification, Expressing, Staining, Comparison, Cell Counting, Immunolabeling